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In a move that foreshadows sweeping statewide reductions in the amount of river water available for human needs, California regulators on Thursday proposed a stark set of cutbacks to cities and farms that receive water from the San Joaquin River and its tributaries.

To protect endangered fish at critical parts of their life cycle, regulators proposed leaving hundreds of thousands of additional acre-feet of water in the San Joaquin River system. As little as 20 percent of the river now flows unimpeded to the Sacramento-San Joaquin Delta, and regulators said they want the so-called “natural” flow raised to at least 30 percent and perhaps as high as 50 percent.

The proposal by staff members at the State Water Resources Control Board is yet another effort to improve the ecosystem of one of California’s most overused river systems, where flows sometimes drop to a comparative trickle. Overhauling the San Joaquin system is sure to add new drama to the conflicts over California’s stretched water supply, a situation that has been complicated by the onset of drought five years ago.

The five-person board will gather input from farmers, environmentalists and others before voting on a plan, likely early next year.

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